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The Faculty of Medicine - Biochemistry and Molecular Biology: Ben-David Eyal


 Last updated June 2021 - School of Pharmacy

List of Publications

(1) Ben-David E, Pliota P, Widen SA, Koreshova A, Lemus-Vergara T, Verpukhovskiy P, et al. Ubiquitous Selfish Toxin-Antidote Elements in Caenorhabditis Species. Curr Biol 2021;31(5):990-1001.e5.

(2) Ben-David E, Boocock J, Guo L, Zdraljevic S, Bloom JS, Kruglyak L. Whole-organism eqtl mapping at cellular resolution with single-cell sequencing. eLife 2021;10.

(3) Burga A, Ben-David E, Kruglyak L. Toxin-Antidote Elements across the Tree of Life. Annu Rev Genet 2020;54:387-415.

(4) Deep-Z: 3D Virtual Refocusing of Fluorescence Images using Deep Learning. Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS; 2020.

(5) Deep-Z: 3D virtual refocusing of fluorescence images using deep learning. Optics InfoBase Conference Papers; 2020.

(6) Deep learning-based virtual refocusing of fluorescence microscopy images for neuron imaging in 3d. Optics InfoBase Conference Papers; 2020.

(7) Burga A, Ben-David E, Lemus Vergara T, Boocock J, Kruglyak L. Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk. Nat Commun 2019;10(1).

(8) Wu Y, Rivenson Y, Wang H, Luo Y, Ben-David E, Bentolila LA, et al. Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning. Nat Methods 2019;16(12):1323-1331.

(9) Ben-David E, Burga A, Kruglyak L. A maternal-effect selfish genetic element in Caenorhabditis elegans. Science 2017;356(6342):1051-1055.

(10) Burga A, Wang W, Ben-David E, Wolf PC, Ramey AM, Verdugo C, et al. A genetic signature of the evolution of loss of flight in the Galapagos cormorant. Science 2017;356(6341).

(11) Shohat S, Ben-David E, Shifman S. Varying Intolerance of Gene Pathways to Mutational Classes Explain Genetic Convergence across Neuropsychiatric Disorders. Cell Rep 2017;18(9):2217-2227.

(12) Kang EY, Martin LJ, Mangul S, Isvilanonda W, Zou J, Ben-David E, et al. Discovering single nucleotide polymorphisms regulating human gene expression using allele specific expression from RNA-seq data. Genetics 2016;204(3):1057-1064.

(13) Hormozdiari F, Kang EY, Bilow M, Ben-David E, Vulpe C, McLachlan S, et al. Imputing Phenotypes for Genome-wide Association Studies. Am J Hum Genet 2016;99(1):89-103.

(14) Miron K, Golan-Lev T, Dvir R, Ben-David E, Kerem B. Oncogenes create a unique landscape of fragile sites. Nat Commun 2015;6.

(15) Ben-David E, Bester AC, Shifman S, Kerem B. Transcriptional dynamics in colorectal carcinogenesis: New insights into the role of c-Myc and miR17 in benign to cancer transformation. Cancer Res 2014;74(19):5532-5540.

(16) Ben-David E, Shohat S, Shifman S. Allelic expression analysis in the brain suggests a role for heterogeneous insults affecting epigenetic processes in autism spectrum disorders. Hum Mol Genet 2014;23(15):4111-4124.

(17) Suliman R, Ben-David E, Shifman S. Chromatin regulators, phenotypic robustness, and autism risk. Front Genet 2014;5(APR).

(18) Nissenbaum J, Bar-Nur O, Ben-David E, Benvenisty N. Global indiscriminate methylation in cell-specific gene promoters following reprogramming into human induced pluripotent stem cells. Stem Cell Rep 2013;1(6):509-517.

(19) Ben-David E, Shifman S. Combined analysis of exome sequencing points toward a major role for transcription regulation during brain development in autism. Mol Psychiatry 2013;18(10):1054-1056.

(20) Brunschwig H, Levi L, Ben-David E, Williams RW, Yakir B, Shifman S. Fine-scale maps of recombination rates and hotspots in the mouse genome. Genetics 2012;191(3):757-764.

(21) Ben-David E, Shifman S. Networks of neuronal genes affected by common and rare variants in autism spectrum disorders. PLoS Genet 2012;8(3).

(22) Huang GJ, Ben-David E, Tort Piella A, Edwards A, Flint J, Shifman S. Neurogenomic evidence for a shared mechanism of the antidepressant effects of exercise and chronic fluoxetine in mice. PLoS ONE 2012;7(4).

(23) Ben-David E, Granot-Hershkovitz E, Monderer-Rothkoff G, Lerer E, Levi S, Yaari M, et al. Identification of a functional rare variant in autism using genome-wide screen for monoallelic expression. Hum Mol Genet 2011;20(18):3632-3641.

(24) Ben-David E, Shifman S. Further investigation of the association between rs7341475 and rs17746501 and schizophrenia. Am J Med Genet Part B Neuropsychiatr Genet 2010;153(6):1244-1247.