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The Faculty of Medicine - Biochemistry and Molecular Biology: Nitzan Mor


 Last updated December 2021 - Biochemistry and Molecular Biology 

List of Publications

(1) Guo Y, Nitzan M, Brenner MP. Programming cell growth into different cluster shapes using diffusible signals. PLoS Comput Biol 2021;17(11).

(2) Biancalani T, Scalia G, Buffoni L, Avasthi R, Lu Z, Sanger A, et al. Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Nat Methods 2021;18(11):1352-1362.

(3) Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M. NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport. Nat Protoc 2021;16(9):4177-4200.

(4) Sadeh R, Sharkia I, Fialkoff G, Rahat A, Gutin J, Chappleboim A, et al. Author Correction: ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin (Nature Biotechnology, (2021), 39, 5, (586-598), 10.1038/s41587-020-00775-6). Nat Biotechnol 2021;39(5):642.

(5) Sadeh R, Sharkia I, Fialkoff G, Rahat A, Gutin J, Chappleboim A, et al. ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin. Nat Biotechnol 2021;39(5):586-598.

(6) Nitzan M, Brenner MP. Revealing lineage-related signals in single-cell gene expression using random matrix theory. Proc Natl Acad Sci U S A 2021;118(11).

(7) Haralampiev I, Prisner S, Nitzan M, Schade M, Jolmes F, Schreiber M, et al. Selective flexible packaging pathways of the segmented genome of influenza A virus. Nat Commun 2020;11(1).

(8) Holmes AB, Corinaldesi C, Shen Q, Kumar R, Compagno N, Wang Z, et al. Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome. J Exp Med 2020;217(10).

(9) Statistical optimal transport via factored couplings. AISTATS 2019 - 22nd International Conference on Artificial Intelligence and Statistics; 2020.

(10) Nitzan M, Karaiskos N, Friedman N, Rajewsky N. Gene expression cartography. Nature 2019;576(7785):132-137.

(11) Nitzan M, Nitzan S, Segal-Halevi E. Flexible level-1 consensus ensuring stable social choice: analysis and algorithms. Soc Choice Welf 2018;50(3):457-479.

(12) Schurr R, Nitzan M, Eliahou R, Spinelli L, Seeck M, Blanke O, et al. Temporal dissociation of neocortical and hippocampal contributions to mental time travel using intracranial recordings in humans. Front Comput Neurosci 2018;12.

(13) Casadiego J, Nitzan M, Hallerberg S, Timme M. Model-free inference of direct network interactions from nonlinear collective dynamics. Nat Commun 2017;8(1).

(14) Nitzan M, Rehani R, Margalit H. Integration of Bacterial Small RNAs in Regulatory Networks. Annu Rev Biophys 2017;46:131-148.

(15) Nitzan M, Casadiego J, Timme M. Revealing physical interaction networks from statistics of collective dynamics. Sci Adv 2017;3(2).

(16) Peer M, Nitzan M, Bick AS, Levin N, Arzy S. Evidence for functional networks within the human brain’s white matter. J Neurosci 2017;37(27):6394-6407.

(17) Nitzan M, Katzav E, Kühn R, Biham O. Distance distribution in configuration-model networks. Phys Rev E 2016;93(6).

(18) Discriminative learning of infection models. WSDM 2016 - Proceedings of the 9th ACM International Conference on Web Search and Data Mining; 2016.

(19) Katzav E, Nitzan M, Ben-Avraham D, Krapivsky PL, Kühn R, Ross N, et al. Analytical results for the distribution of shortest path lengths in random networks. EPL 2015;111(2).

(20) Nitzan M, Shimoni Y, Rosolio O, Margalit H, Biham O. Stochastic analysis of bistability in coherent mixed feedback loops combining transcriptional and posttranscriptional regulations. Phys Rev E Stat Nonlinear Soft Matter Phys 2015;91(5).

(21) Sajman J, Zenvirth D, Nitzan M, Margalit H, Simpson-Lavy KJ, Reiss Y, et al. Degradation of Ndd1 by APC/CCdh1 generates a feed forward loop that times mitotic protein accumulation. Nat Commun 2015;6.

(22) Nitzan M, Mintzer S, Margalit H. Approaches and developments in studying the human microbiome network. Isr J Ecol Evolution 2015;61(2):90-94.

(23) Nitzan M, Fechter P, Peer A, Altuvia Y, Bronesky D, Vandenesch F, et al. A defense-offense multi-layered regulatory switch in a pathogenic bacterium. Nucleic Acids Res 2015;43(3):1357-1369.

(24) Nitzan M, Steiman-Shimony A, Altuvia Y, Biham O, Margalit H. Interactions between distant ceRNAs in regulatory networks. Biophys J 2014;106(10):2254-2266.

(25) Nitzan M, Wassarman KM, Biham O, Margalit H. Global regulation of transcription by a small RNA: A quantitative view. Biophys J 2014;106(5):1205-1214.

(26) Peer M, Nitzan M, Goldberg I, Katz J, Gomori JM, Ben-Hur T, et al. Reversible functional connectivity disturbances during transient global amnesia. Ann Neurol 2014;75(5):634-643.

(27) Mills E, Baruch K, Aviv G, Nitzan M, Rosenshine I. Dynamics of the type III secretion system activity of enteropathogenic Escherichia coli. mBio 2013;4(4).

(28) Zahavi EE, Lieberman JA, Donnenberg MS, Nitzan M, Baruch K, Rosenshine I, et al. Bundle-forming pilus retraction enhances enteropathogenic Escherichia coli infectivity. Mol Biol Cell 2011;22(14):2436-2447.